FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007931678

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931678
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences552503
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG21480.38877616954116084No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT17040.3084146149432673No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG13400.24253261973238155No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC11490.20796267169590027No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT9790.1771936079985086No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC8830.15981813673409917No Hit
GAAGGCCCGTCTACCGGTCCGCGCGGCCAGGGT8110.1467865332857921No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCGCC7350.13303095186813466No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG7250.13122100694475866No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC7190.13013503999073306No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6350.11493150263437484No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTCGT6260.11330255220333646No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC6260.11330255220333646No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGGGC6180.11185459626463566No Hit
TGGCGCCCTGCCCCGTGGACCCCGAACCCGCCG5950.10769172294087093No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC5770.10443382207879415No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)