FastQCFastQC Report
Wed 31 May 2023
EGAF00007931679

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931679
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences463171
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT16810.36293291246645404No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGA15800.3411267113010098No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC15780.34069490533733765No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG15390.3322746890457304No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT14930.32234315188127066No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC12900.27851484656854597No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT11710.2528223917300522No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT10460.2258345190005419No Hit
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCA10180.2197892355091316No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT10060.21719839972709865No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCT9960.21503936990873782No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTT9800.21158492219936048No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT9150.19755122838001513No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCG8320.17963128088762034No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT8110.1750973182690626No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG8110.1750973182690626No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGG8020.17315419143253788No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT7600.1640862661954224No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGT7140.15415472903096264No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCT6980.15070028132158533No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG6740.14551860975751937No Hit
GTGACGACGGCGGCGTTCACCGCCGTCCGGACCTTCGCCTT6720.1450868037938472No Hit
GCGCAGACCCGGGAAACGGTCACGTGCCGCCTGCAGTGCGC6440.13904152030243688No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG6400.13817790837509258No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA6350.13709839346591216No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA6250.13493936364755132No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT6220.1342916547020431No Hit
AACGGTTACGCTGCTCTGTTCAGACGGACCCGGGCGTTCCG6220.1342916547020431No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGT5550.1198261549190256No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGA5540.1196102519371895No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA5430.11723531913699262No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAA5420.11701941615515651No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGT5280.11399677440945136No Hit
ACCCTCACCGGAACGAGCCGGACGAGAACCTTCACGGTGAC5170.11162184160925448No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG5020.10838329688171322No Hit
AACGGTGACGCTAGACTGTTCGGAAGGACCCGGACGTTCTG4860.10492884917233593No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCT4790.10341752829948335No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)