FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007931680

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931680
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences463171
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTATT30480.6580722886363783No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT20110.4341808964723612No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC16840.36358062141196235No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGATG16190.34954692759261696No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG15390.3322746890457304No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC13530.29211673442421915No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG12670.27354907798631606No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC11960.2582199662759542No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT11910.2571404513667738No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC11860.2560609364575934No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT11330.24461807842028108No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTGGT10670.23036848161909965No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAATCC9900.2137439520177213No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAATCT9180.1981989373255234No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG8690.18761969121555536No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA8510.1837334375425059No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC8500.1835175345606698No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAACGC8350.1802789898331286No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTCGT8050.1738019003780461No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT7890.17034745266866883No Hit
GATGGCGAACACCGTCGTCACCGTGCCCACCGT7520.16235904234073376No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT7100.1532911171036183No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC7000.1511320872852575No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC6880.1485412515032245No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAACTG6710.14487090081201112No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAAGC6670.1440072888846668No Hit
GGTCCGGGCATTAACCCAATCAGCAAAACCGAA6660.14379138590283072No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT6540.14120055012079774No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCACC5740.12392831157391115No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAACTG5710.12328060262840289No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTGAA5570.12025796088269776No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGTTC5570.12025796088269776No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCCGC5450.11766712510066475No Hit
CGTCACGCACATCGCCAGGGTGTAGGCGGCAGC5390.11637170720964828No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5350.11550809528230394No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGCTG5170.11162184160925448No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATCCG4990.10773558793620498No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAACTG4710.10169030444479468No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)