FastQCFastQC Report
Wed 31 May 2023
EGAF00007931681

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931681
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences476502
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG10540.2211952940386399No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT9900.20776408073838096No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG9820.20608517907584858No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT8690.18237069309257883No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT7490.15718716815459327No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAA7220.15152087504354653No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA7190.15089128692009687No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT6890.14459540568560048No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG6690.14039815152926954No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)