FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007931683

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931683
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences458211
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG10580.23089799240961045No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT9350.20405446399147992No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT8950.1953248612538765No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG8530.1861587783793929No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA7350.16040645030346282No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT6670.145566125649537No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAA6420.14011012393853486No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG6420.14011012393853486No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT6360.13880068352789435No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)