FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007931685

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931685
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences461813
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT10430.22584899082529075No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT9780.21177402974797158No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG8640.18708871339698102No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT6340.13728500496954396No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT6140.1329542477149842No Hit
CTGGGAGGTCAGGAACACCAGGTAGCTGCGCTGAGCTTCAC5760.12472580893132068No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT5070.10978469640308956No Hit
GACCGGCCATTCCGGGGTGCGCGGACGTGGACGACCGTGAA4840.10480432556034586No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTA4810.1041547119721619No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGT4740.10263894693306598No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)