FastQCFastQC Report
Wed 31 May 2023
EGAF00007931686

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931686
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences461813
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT11510.24923507999991337No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC10240.221734771433459No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG10180.22043554425709108No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC7220.15634033688960683No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC6330.13706846710681597No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA5930.12840695259769647No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGCAG5910.12797387687224052No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT5480.11866274877493704No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5340.11563121869674522No Hit
ACTAGCGAACCGTGCGAAGCGCTGGACCTGTCC5150.11151699930491345No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG4970.10761931777580969No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTACC4820.10437124983488988No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)