FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007931687

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931687
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences471289
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC13120.27838544926785896No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT12620.26777624769515096No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG7120.1510750303953625No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT5700.12094489792887167No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA5650.11988397777160087No Hit
CGGGACGCGCAGACCGGAAACGGAGTCGCGTACCCAGTATA5540.1175499534256051No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA4820.10227270316090552No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)