FastQCFastQC Report
Sun 21 May 2023
EGAF00007931688

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931688
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences471289
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22330.47380694223714115No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT14690.31169834220616227No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC12490.26501785528624683No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG11670.24761876470700567No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG7370.15637963118171652No Hit
ATGCGCGCTGCTCGTCGTCTGGCCGCTGGCATT6640.14089019688556279No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC5780.12264237018050496No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT5740.12179363405468832No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT5740.12179363405468832No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)