FastQCFastQC Report
Wed 31 May 2023
EGAF00007931689

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931689
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences486399
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC13940.28659598395555913No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT13670.2810449857010397No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG6950.14288680692188924No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT6180.12705618227011156No Hit
CGGGACGCGCAGACCGGAAACGGAGTCGCGTACCCAGTATA6120.1258226271024406No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA5720.117598925984634No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA5140.10567455936381447No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)