FastQCFastQC Report
Sun 21 May 2023
EGAF00007931691

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931691
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences463143
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA22930.49509546727468623No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG21050.4545032527750608No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT13910.30033920409031334No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC10120.21850702698734517No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC9140.19734725559924257No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT7430.16042561368734926No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC6320.1364589338498045No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG6180.13343610936578984No Hit
ACGGTGCGCACGGGTGATAACGTCGTGGTCATCGGAACGGT5950.1284700405706229No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT5890.12717454436318804No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGG5380.11616282659999179No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG4870.10515110883679556No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAA4760.10277603245649831No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)