FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007931693

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931693
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences464943
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA23410.5035025798861367No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG20940.4503777882450106No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT13260.28519624986288644No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC10260.22067221143236912No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC9390.20196024028751913No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT7690.165396618510226No Hit
ACGGTGCGCACGGGTGATAACGTCGTGGTCATCGGAACGGT6720.14453384608435874No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG6550.1408774839066294No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC6550.1408774839066294No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT6280.13507032044788286No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAA5670.12195043263367768No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGG5170.11119642622859145No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG4870.10474402238553973No Hit
CCAAACTTCGTCGGCCGCATCACGAGAAGCGGTCTGAGTGA4800.10323846148882768No Hit
CAGACGTGGTTTGGTGGACGGTTTGTTAGTCTGGGTAGAAG4800.10323846148882768No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)