FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007931694

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931694
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences464943
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG53331.1470223231664955No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT21000.45166826901362106No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC13200.28390576909427606No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC8740.18798003196090704No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT8030.17270934286568462No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT7820.1681926601755484No Hit
CATTCTAACGATCAGCACGCGGGTGATCACATC7320.15743865377046218No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC7050.15163149031171563No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT6900.14840528839018977No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT6580.1415227242909346No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5550.11936947109645699No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCGAA5330.11463770827821905No Hit
GCTTGGGCGCTGAAAAACCCGCACCTGGCATAC4890.10517418264174318No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)