FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007931695

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931695
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences490613
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGAC11980.2441843163552535No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG9630.1962850556344818No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG9070.18487076371804254No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTT8300.16917611233293858No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC7380.15042406132735986No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT7220.14716283506552008No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT6740.13737915628000075No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC5970.1216845048948968No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT5910.12046154504670688No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT5750.11720031878486709No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)