FastQCFastQC Report
Sun 21 May 2023
EGAF00007931697

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931697
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences526553
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAG15080.28639092361072865No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT13570.2577138483685403No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGA12660.24043163746099633No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCT11690.22200994011998795No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG11570.21973096725305905No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTG9790.18592620306028074No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCT9630.18288757257104224No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT8950.1699733929917786No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG8680.16484570404118865No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA8130.1544004117344313No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC7740.14699374991691244No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT6970.13237034068745215No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCG6940.13180059747071995No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAA6790.12895188138705885No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCA6520.12382419243646889No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAG6420.12192504838069482No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG5920.1124293281018245No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTG5800.11015035523489562No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGT5690.10806129677354416No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGT5560.10559240950103789No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGAC5480.10407309425641863No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC5360.10179412138948975No Hit
GGCTGGAATGGATTCGGAGTTGCGCGGGCCGGTCGGCAGGG5280.1002748061448705No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)