FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007931698

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931698
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences526553
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTGAACAGAAACAGCTGCTGCAGGGTGACGTT14800.2810733202545613No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC13910.2641709381581721No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT13810.26227179410239804No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG12830.24366018235581224No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGATG12810.2432803535446574No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAGAA12240.2324552324267453No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATGTA10320.1959916665558833No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT10250.19466226571684142No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT10140.19257320725548996No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC9620.18269765816546482No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAGAA9540.1811783429208456No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG9280.17624056837583302No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC7210.1369282864213099No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATCCA7170.1361686287990003No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAACAG6990.132750169498607No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAACTG6640.12610316530339774No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCCCG6580.12496367886993331No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATCCG6450.12249479159742704No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGCTG6320.12002590432492076No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG6310.11983598991934334No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGCCG6010.11413855775202117No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC5970.11337890012971155No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5920.1124293281018245No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAACAG5860.11128984166836008No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATGTT5850.11109992726278267No Hit
TCTGCCTGCAACGATTTCAGCGTTCGTATGCTG5800.11015035523489562No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTGGT5650.10730163915123453No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC5340.10141429257833495No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)