FastQCFastQC Report
Wed 31 May 2023
EGAF00007931700

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931700
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences510465
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG23840.4670251633314723No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC13820.27073354686413365No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACGTT13740.2691663483294643No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT13470.2638770532749552No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGATG12800.2507517655470992No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG12650.24781326829459416No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAGAA11170.2188200954032108No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATGTA9900.19394081866533455No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT9410.18434172764048465No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC9290.1819909298384806No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG9260.1814032303879796No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAGAA9170.17964013203647655No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT8560.1676902432096226No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC6990.1369339719667362No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAACAG6810.13340777526373013No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATCCA6800.13321187544689644No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATCCG6590.12909797929338934No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTGGT6430.12596358222405063No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGCTG6360.12459228350621492No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAACTG6270.12282918515471189No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAACAG6190.1212619866200425No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG6060.11871528900120479No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGCCG5700.11166289559519263No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC5660.11087929632785792No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATGTT5490.10754899944168553No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCCCG5340.10461050218918044No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC5300.10382690292184577No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTGGC5250.10284740383767742No Hit
TCTGCCTGCAACGATTTCAGCGTTCGTATGCTG5120.10030070621883967No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)