FastQCFastQC Report
Wed 31 May 2023
EGAF00007931701

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931701
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences478660
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA13810.2885137676012201No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG12520.2615635315255087No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC8410.17569882588893995No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT6550.13684034596582126No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC6400.13370659758492456No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG5690.11887352191534702No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT4830.10090669786487277No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)