FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007931704

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931704
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences495287
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG33960.6856630600035939No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT17060.34444675511370176No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC6810.13749603765089738No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC6670.13466939370506392No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG6070.12255520536577783No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT5890.11892094886399199No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5610.11326766097232513No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC5250.10599914796875347No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)