FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007931705

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931705
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences482587
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGAC15410.31932066135225357No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT12070.25011034279829336No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC11870.24596601234596044No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA11140.23083920619494513No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC10900.22586600965214562No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG10740.22255054529027926No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT9590.1987206451893648No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT7030.1456732153995031No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA6210.128681460544938No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG5640.11687011875578912No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCG5340.11065362307728968No Hit
GCGCTGTTTAGCCAGCAGTTCCGCTGCTTTACGTTCTTCCT5090.1054732100118735No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTT5070.10505877696664022No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)