FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007931706

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931706
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences482587
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG25190.5219784204713347No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT24860.5151402752249854No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCGCC15290.3168340630808538No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC13130.272075294195658No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT12720.26357941676837543No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC12030.24928147670782674No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT7190.14898867976136945No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5790.11997836659503883No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAACAC5700.11811341789148899No Hit
CAGTCCCAACCGCAGCGTCGTAAACGTCGCGCG5300.1098247569868231No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCCAG5300.1098247569868231No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT5130.1063020761023401No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)