FastQCFastQC Report
Wed 31 May 2023
EGAF00007931710

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931710
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences486055
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG9910.20388639145775683No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT8550.17590601886617768No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG7600.1563609056588246No Hit
TCCTCCAACAGCCCGCACGTGGTTAAAACCGCA7470.15368631121992368No Hit
ACCACTCCGACGAAAAGCCACTTCGCAAACCTG7320.1506002407134995No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC7260.14936581251092984No Hit
ACCCAGGGCGAAGTAAACGTGACGGGTGTTATC6130.12611741469586776No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT5950.12241413008815874No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5560.1143903467714559No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG5510.11336165660264785No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC5380.1106870621637469No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA5160.10616082542099145No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC5090.10472065918466017No Hit
CCGACCAAGTCTCACTTCGCCAACCTGAAGGGT5020.10328049294832889No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACGTT4900.10081163654318956No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)