FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007931711

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931711
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences486821
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AACTTCGTGCAGGATAGAGGCCTTAGCGGACGGAATGGTAC7370.15139034675989738No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT7220.14830913210399715No Hit
GTCGGTGCAGTTCAGACAAGTTGGGCACAGTTTACCACGAG6790.1394763167570832No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT6730.1382438308947231No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG6720.13803841658432975No Hit
CATGCATTTTGGGCGGCCCAGGGCAACGTCCAGATCAGTGC5910.1213998574424686No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG5720.11749698554499496No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA4890.1004475977823471No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)