FastQCFastQC Report
Sun 21 May 2023
EGAF00007931713

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931713
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences473661
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT7090.14968511234828283No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT6690.1412402541057845No Hit
AACTTCGTGCAGGATAGAGGCCTTAGCGGACGGAATGGTAC6510.13744006789666027No Hit
GTCGGTGCAGTTCAGACAAGTTGGGCACAGTTTACCACGAG6490.13701782498453535No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG5990.12646175218141245No Hit
CATGCATTTTGGGCGGCCCAGGGCAACGTCCAGATCAGTGC5950.1256172663571626No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG5210.1099942786085407No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)