FastQCFastQC Report
Sun 21 May 2023
EGAF00007931714

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931714
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences473661
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG23200.489801778064903No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG9960.21027697023820835No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT8120.17143062232271603No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG7260.1532741771013446No Hit
TCCTCCAACAGCCCGCACGTGGTTAAAACCGCA7140.15074071962859514No Hit
ACCACTCCGACGAAAAGCCACTTCGCAAACCTG6790.1433514686664091No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC6540.13807343226484764No Hit
ACCCAGGGCGAAGTAAACGTGACGGGTGTTATC5740.12118371577985099No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG5590.11801689393891412No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC5190.1095720356964158No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT5060.10682745676760383No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA4940.10429399929485433No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACGTT4840.10218278473422976No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC4740.10007157017360517No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)