FastQCFastQC Report
Sun 21 May 2023
EGAF00007931715

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931715
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences483351
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAA13110.27123146533264647No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCG9260.1915792043463239No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG8260.1708903053888375No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGC7940.16426985772244185No Hit
CAGGCTAAACGCTGCGTGACGCTGTTGCTGCTGCGGAATGT7100.1468911825981533No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA5250.10861671952680352No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)