FastQCFastQC Report
Wed 31 May 2023
EGAF00007931716

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931716
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences483351
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG23770.4917751282194513No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCGAA12710.2629559057496519No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG11640.2408187838651415No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCGCG9020.18661386859652715No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC8710.1802003099197064No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGGTG7860.16261474580584295No Hit
TTCACTCCGATCAAGAAACCGGGTACCTCCGGC7300.15102896238965058No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC4980.10303071680828219No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)