FastQCFastQC Report
Wed 31 May 2023
EGAF00007931717

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931717
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences501077
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAA12890.25724589234788264No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCG9720.19398216242214272No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG8630.1722290186937337No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGC8440.16843718630070828No Hit
CAGGCTAAACGCTGCGTGACGCTGTTGCTGCTGCGGAATGT7460.14887931395773504No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA5480.10936442901989116No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)