FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007931719

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931719
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences489983
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAA13380.273070698371168No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCG9850.201027382582661No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG8760.17878171283493507No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGC7920.16163826091925637No Hit
CAGGCTAAACGCTGCGTGACGCTGTTGCTGCTGCGGAATGT7370.15041338168875246No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA5390.11000381645893838No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)