FastQCFastQC Report
Sun 21 May 2023
EGAF00007931720

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931720
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences489983
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22680.46287320172332513No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCGAA13130.26796848053912076No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG12040.2457228107913948No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCGCG9610.19612925346389568No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC9240.18857797107246577No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGGTG7910.1614341722059745No Hit
TTCACTCCGATCAAGAAACCGGGTACCTCCGGC7650.15612786566064535No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGGTA4930.10061573564797147No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)