FastQCFastQC Report
Sun 21 May 2023
EGAF00007931721

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931721
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences460500
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT13110.28469055374592833No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG12450.2703583061889251No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT9280.2015200868621064No Hit
AACAGCGGTAGACGGAGCGGAAGAGGCCAGAGCGCCAGTAC9250.20086862106406084No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT9180.1993485342019544No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT8920.19370249728555916No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC7850.17046688382193267No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT7470.16221498371335505No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGT7460.16199782844733984No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC7320.15895765472312703No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT6790.14744842562432137No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT5980.1298588490770901No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT5820.12638436482084692No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT5770.1252985884907709No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGG5170.11226927252985885No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCG4850.10532030401737241No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)