FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007931722

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931722
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences460500
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT17570.3815418023887079No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT16410.35635179153094465No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG13680.2970684039087948No Hit
CGTCGCCAGCGTGCAATCGACAAACGCCAGCGT10430.2264929424538545No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT9760.21194353963083606No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC9340.2028230184581976No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC9290.2017372421281216No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA9260.201085776330076No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC8700.18892508143322476No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC7740.16807817589576546No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT7710.16742671009771987No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC7610.16525515743756786No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT6230.13528773072747016No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT5910.1283387622149837No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5630.12225841476655808No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTGAA5330.11574375678610206No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAAAC5270.11444082519001086No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAACAC5150.11183496199782844No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTCGT4730.10271444082519002No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)