FastQCFastQC Report
Sun 21 May 2023
EGAF00007931723

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931723
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences443305
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAA11180.25219656895365494No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG9090.2050506987288661No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG8560.19309504742784311No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT7720.17414646800735387No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT7460.16828143152005956No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCG7310.1648977566235436No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT6810.15361884030182382No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT6650.15000958707887346No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT5880.13264005594342496No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA5010.11301474154363249No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT4840.10917990999424776No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG4810.10850317501494455No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT4730.1066985484034694No Hit
ATCGCTAATCTGTACTTTTTTAGCTTCGCGGCCACGAGAAC4460.10060793358974068No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)