FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007931724

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931724
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences443305
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21590.48702360677186135No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT12290.2772357631878729No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG12020.2711451483741442No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCGAA11030.248812894057139No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC9720.21926213329423308No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC7840.1768534079245666No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC7460.16828143152005956No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCGCG7240.16331870833850284No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT7010.15813040683051172No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG6650.15000958707887346No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC6410.14459570724444795No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT5130.11572168146084524No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC4790.10805201836207577No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA4660.10511950011842862No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTATG4500.10151024689547829No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)