FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007931725

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931725
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences459980
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAA11850.2576198965172399No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG9780.21261793991043088No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG9450.20544371494412803No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT8000.17392060524370623No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCG7490.16283316665941996No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT7410.16109396060698292No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT7010.1523979303447976No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT6680.14522370537849472No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT5860.12739684334101484No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA5040.10956998130353494No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT4890.10630896995521544No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT4810.10456976390277838No Hit
ATCGCTAATCTGTACTTTTTTAGCTTCGCGGCCACGAGAAC4730.10283055785034131No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG4630.100656550284795No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)