FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007931726

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931726
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences459980
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT13800.30001304404539325No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCGAA11840.25740249576068525No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG11630.25283707987303794No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC10200.2217487716857255No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC7870.17109439540849603No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC7770.1689203878429497No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT7480.16261576590286536No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCGCG7280.1582677507717727No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG6730.14631070916126787No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC6660.14478890386538545No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC5130.11152658811252664No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5120.111309187355972No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT5060.11000478281664419No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA4830.10500456541588765No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTATG4680.10174355406756816No Hit
GAAATGGAGAACATCCTGCAGAACCTGACTCTG4650.10109135179790425No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)