FastQCFastQC Report
Sun 21 May 2023
EGAF00007931731

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931731
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences496303
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC13830.27866041510931827No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC13120.2643546381948124No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT11010.2218402870826894No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA10440.2103553675879453No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG8960.18053487486474998No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA7550.1521248108514355No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG7060.14225180988226951No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG6710.1351996663328652No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT6180.12452070610091014No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)