FastQCFastQC Report
Wed 31 May 2023
EGAF00007931732

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931732
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences496303
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTATT29590.5962083646482088No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG23970.4829710882263456No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC15080.3038466420714765No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT14650.29518257999649405No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT10160.20471365274842185No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6550.13197582928170895No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC6470.13036391075613082No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC5170.10417023471548631No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT5170.10417023471548631No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)