FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007931733

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931733
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences513643
Sequences flagged as poor quality0
Sequence length41
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT15030.29261568832827467No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT10010.19488243780213105No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTA8710.16957303029536078No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG8280.1612014570431214No Hit
GATTTCCGGGGTTTTGACAGAACGCAGCAGGTCAGCGATGG7870.15321925929098615No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA6720.13083016803499709No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAG6440.12537891103353885No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTG6190.12051171728223688No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACC6080.11837015203166401No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGA5730.11155608077984126No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGAC5610.10921982777921631No Hit
ATCCGGCTGGAACAGGGCACCCAGTTTAGAGCTGCGGATAG5390.10493669727807058No Hit
ACCCACTTCGACGTGGTCACCGTCAGACAGTACACGTTCGC5160.10045887902687274No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)