FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007931734

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931734
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences513643
Sequences flagged as poor quality0
Sequence length33
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC14830.2887219333272331No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT10420.2028646355542663No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT9720.18923649305062076No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC9050.17619241379713146No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACATT8800.17132522004582948No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG8760.17054646904562118No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTACC8710.16957303029536078No Hit
CAGGGCCGTTATACTACCAACGACGGTTACGTT6870.13375048428577824No Hit
TCCTACACCAACGGCAAACTGACTATCACCCCG6490.12635234978379925No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGGTA6320.1230426580329139No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACAAC6120.11914890303187232No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5880.11447639703062243No Hit
AGCGACCGTGGCGCTTCCGCACTGCAGCTGGAA5610.10921982777921631No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCGCC5590.10883045227911214No Hit
CTGGAAGACGGCGAGCGCTTCTATAAGATTACC5370.1045473217779664No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCTAC5140.10006950352676859No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)