FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007931735

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931735
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences513755
Sequences flagged as poor quality0
Sequence length41
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT14920.290410798921665No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT10740.2090490603497776No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTA8320.16194489591342176No Hit
GATTTCCGGGGTTTTGACAGAACGCAGCAGGTCAGCGATGG7990.1555216007630096No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA7660.14909830561259746No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG7590.1477357884594797No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAG6190.1204854453971251No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACC6170.12009615478194859No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTG6030.11737112047571314No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGA5830.1134782143239482No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCT5340.10394059425212407No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGAC5340.10394059425212407No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)