FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007931736

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931736
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences513755
Sequences flagged as poor quality0
Sequence length33
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC14810.2882697005381943No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT10970.21352590242430727No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT9750.18977917489854113No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC9250.18004690951912877No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACATT9180.17868439236601105No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG8230.16019308814512753No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTACC8190.15941450691477457No Hit
CAGGGCCGTTATACTACCAACGACGGTTACGTT6860.13352668100553766No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGGTA6370.12398906093371355No Hit
TCCTACACCAACGGCAAACTGACTATCACCCCG6190.1204854453971251No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACAAC6160.11990150947436035No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5590.10880672694183025No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCTAC5480.10666562855835952No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCGCC5340.10394059425212407No Hit
AGCGACCGTGGCGCTTCCGCACTGCAGCTGGAA5300.10316201302177108No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)