FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007931737

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931737
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences532730
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAG11340.2128658044412742No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGT10050.1886509113434573No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGAC10020.18808777429467086No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGT9420.17682503331894206No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGC9310.17476019747339178No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTG8930.16762712818876355No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAA8590.16124490830251723No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT8480.15918007245696694No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCT8190.15373641431869803No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA8000.1501698796763839No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG7780.14604020798528336No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG7340.13778086460308223No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCT7340.13778086460308223No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG7270.13646687815591388No Hit
TACGTGACGGGTCTGCACGGTGTCAGACGGCGCCAGCGGGT7260.13627916580631838No Hit
CGCCGGAACTTCTTTAGAGTGAGCTGGACCGGATGCTTTAG7230.13571602875753194No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG6260.11750793084677041No Hit
TGCCCCATTTAAATCAGCCTGTCACTGGACAACGTGACGGG6190.11619394439960205No Hit
CTGAACGACGTGACGGGTCTGTACAGTGTCAGACGGGGCCA6020.11300283445647889No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAG5850.10981172451335573No Hit
GTTGGTAGCGCCGGTTTCCACCGCGGTCAGCGCCGGAACTT5470.10267865522872749No Hit

[OK]Adapter Content

Adapter graph