FastQCFastQC Report
Sun 21 May 2023
EGAF00007931738

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931738
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences532730
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG18320.3438890244589191No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAACAG17420.32699491299532596No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAACAG13740.25791676834418936No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACGTT12750.23933324573423687No Hit
CGTGACACCACTCACATTTCCCAGAGCGCACTG12730.23895782103504593No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATGTA11100.20836070805098267No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTGGT10460.19634711767687196No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTGGC9460.17757588271732397No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAACAG9260.17382163572541437No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAGAA8920.16743941583916808No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCGAA8440.15842922305858503No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC8300.1558012501642483No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC7850.1473541944324517No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC7660.1437876597901376No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAGAA7300.13703001520470032No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG6770.12708126067613987No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC6720.1261426989281625No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT6130.11506767030202918No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6060.11375368385486082No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGGAC6030.11319054680607438No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATCCG5860.1099994368629512No Hit
GCGCTGACTCTGTCCCTGCCGAAACAGCAGGAC5740.10774688866780546No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)