FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007931739

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931739
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences516011
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAG11360.22015034563216676No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGAC10590.20522818312012728No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGT9890.19166258083645504No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGC9040.17519006377771015No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTG8730.16918243990922674No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAA8530.16530655354246324No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGT8530.16530655354246324No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA8310.1610430785390234No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCT8170.15832995808228895No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT8020.15542304330721632No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG7180.13914432056680964No Hit
TACGTGACGGGTCTGCACGGTGTCAGACGGCGCCAGCGGGT7050.13662499442841336No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG7000.13565602283672248No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG6930.13429946260835526No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCT6770.13119875351494445No Hit
CGCCGGAACTTCTTTAGAGTGAGCTGGACCGGATGCTTTAG6670.1292608103315627No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG5850.11336967622783235No Hit
CTGAACGACGTGACGGGTCTGTACAGTGTCAGACGGGGCCA5790.1122069103178033No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA5560.10774964099602528No Hit
GTTGGTAGCGCCGGTTTCCACCGCGGTCAGCGCCGGAACTT5460.10581169781264353No Hit
TGCCCCATTTAAATCAGCCTGTCACTGGACAACGTGACGGG5430.105230314857629No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAG5270.10212960576421821No Hit
CTGGACTACGTGACGCGTCTGAACGGTATCGCTCGGCGCCA5230.1013544284908655No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)