FastQCFastQC Report
Wed 31 May 2023
EGAF00007931741

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931741
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences465221
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG7800.16766225084422243No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC7710.16572768641140448No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAG7090.15240068698532527No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT6990.15025117094886087No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC6920.1487465097233358No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT6270.13477465548631726No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT6240.13412980067537794No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCG6060.13026067180974202No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGT5960.12811115577327767No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT5960.12811115577327767No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT5480.11779347879824857No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACG5140.11048512427426964No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT4790.10296181814664428No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)