FastQCFastQC Report
Wed 31 May 2023
EGAF00007931751

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931751
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences492536
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA16350.3319554306690272No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG15050.3055614208910618No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT12350.2507430928906719No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG9660.196127795734728No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT9640.19572173404583623No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCG9110.18496109929020416No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA7940.16120649049003524No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAA6370.1293306479120308No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTT6110.12405184595643769No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTG5580.11329121120080562No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCG5570.11308818035635974No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTG5380.10923059431188786No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG5240.10638816248964543No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCA5190.105373008267416No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCG5150.10456088488963243No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGG5010.10171845306739No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)