FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007931752

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931752
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences492536
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG37740.7662384069387821No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC11800.23957639644614812No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT10970.22272483635713938No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC10590.2150096642681956No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG10580.21480663342374973No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT9950.20201569022365878No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAGAA9160.1859762535124336No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGGCC8000.16242467555671058No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT7540.15308525671219972No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTGAC6580.13359429564539443No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCGAA6320.12831549368980136No Hit
CAGGGCCGTTATACTACCAACGACGGTTACGTT6260.12709730862312604No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAACTG6110.12405184595643769No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT5920.12019425991196583No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGGCT5680.11532151964526452No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC5600.1136972728896974No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5490.11146393360079263No Hit
GCCGTCGCGAACAGCAACAACGACACCGCTAAA5390.10943362515633374No Hit
CTGTCCTCCATGGCTATCACCTTCAAACGCGCG5330.10821544008965843No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)