FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007931754

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931754
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences451241
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT19470.4314767496747858No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAATCT10540.23357806582291946No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT10400.23047551086891482No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC10310.22848101125562617No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG9200.20388218269173233No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAATCC8840.1959041842385776No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC8800.19501773996600485No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATCCG8390.18593168617213418No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC7920.17551596596940439No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC7910.1752943549012612No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT7800.17285663315168612No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAACTG7350.1628841350852427No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC6850.15180358167808333No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGCAG6660.14759297138336278No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAAGC6450.14293913895235583No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATCCA6420.14227430574792627No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGCCG6100.13518275156734427No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA6090.1349611404992011No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG5960.13208019661333964No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGATG5870.130085697000051No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAAAC5760.12764797525047591No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5430.12033481000175072No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT5260.11656742184331655No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAACTG5220.11568097757074379No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACCAC5120.11346486688931191No Hit
CACCCAGGTGTGCCGGTCTCTCCAGCCGTTAAC5120.11346486688931191No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTCGT5100.11302164475302555No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGGAA4700.10415720202729806No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCTTC4640.10282753561843892No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)