FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007931755

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931755
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences477886
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA7810.1634280979145654No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT6880.14396738971219078No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG6690.13999154610095293No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT6660.13936378132023117No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG6290.1316213490246628No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGA6030.12618072092507418No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAA5100.10672001272269956No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)